Contents:
Overview and Installation Instructions
Theory Overview
Density and Orbital Features in CiderPress
DFT Module
The Models Module
PySCF Interface
GPAW Interface
C Extension Libraries
CiderPress
Index
Index
A
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B
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C
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D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
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X
|
Y
|
Z
A
add_reactions() (ciderpress.models.train.MOLGP method)
ADKernel (class in ciderpress.models.kernels)
ALLOWED_I_SPECS_L0 (in module ciderpress.dft.settings)
ALLOWED_I_SPECS_L1 (in module ciderpress.dft.settings)
ALLOWED_J_SPECS (in module ciderpress.dft.settings)
ALLOWED_K_SPECS (in module ciderpress.dft.settings)
ALLOWED_RHO_DAMPS (in module ciderpress.dft.settings)
ALLOWED_RHO_MULTS (in module ciderpress.dft.settings)
B
BaseSettings (class in ciderpress.dft.settings)
bounds (ciderpress.models.kernels.ADKernel property)
(ciderpress.models.kernels.DiffTransform property)
C
calculate_vxc() (ciderpress.pyscf.analyzers.ElectronAnalyzer method)
calculate_vxc_on_mo() (ciderpress.pyscf.analyzers.ElectronAnalyzer method)
cider_functional_from_dict() (in module ciderpress.gpaw.calculator)
CiderGPAW (class in ciderpress.gpaw.calculator)
ciderpress.dft.feat_normalizer
module
ciderpress.dft.plans
module
ciderpress.dft.settings
module
ciderpress.dft.transform_data
module
ciderpress.dft.xc_evaluator
module
ciderpress.dft.xc_evaluator2
module
ciderpress.gpaw.calculator
module
ciderpress.models.dft_kernel
module
ciderpress.models.kernel_plans.kernel_tools
module
ciderpress.models.kernels
module
ciderpress.models.train
module
ciderpress.pyscf.analyzers
module
ciderpress.pyscf.descriptors
module
ciderpress.pyscf.dft
module
ciderpress.pyscf.pbc.dft
module
ciderpw_add_atom_info (C function)
ciderpw_add_potential_vj (C function)
ciderpw_allocate_buffers (C function)
CIDERPW_C2C (C macro)
ciderpw_compute_features (C function)
ciderpw_compute_kernels (C function)
ciderpw_compute_kernels_helper (C function)
ciderpw_compute_kernels_sym (C function)
ciderpw_compute_kernels_sym_helper (C function)
ciderpw_compute_kernels_t (C function)
ciderpw_compute_potential (C function)
ciderpw_convolution_bwd (C function)
ciderpw_convolution_fwd (C function)
ciderpw_copy_work_array (C function)
ciderpw_copy_work_array_real (C function)
ciderpw_copy_work_array_recip (C function)
ciderpw_create (C function)
ciderpw_data (C type)
ciderpw_data_obj (C struct)
ciderpw_data_obj.cell (C var)
ciderpw_data_obj.errorcode (C var)
ciderpw_data_obj.fft_type (C var)
ciderpw_data_obj.gLDA (C var)
ciderpw_data_obj.icell (C var)
ciderpw_data_obj.initialized (C var)
ciderpw_data_obj.k2_G (C var)
ciderpw_data_obj.kernel (C var)
ciderpw_data_obj.kLDA (C var)
ciderpw_data_obj.kx_G (C var)
ciderpw_data_obj.ky_G (C var)
ciderpw_data_obj.kz_G (C var)
ciderpw_data_obj.mpi_rank (C var)
ciderpw_data_obj.mpi_size (C var)
ciderpw_data_obj.Ng (C var)
ciderpw_data_obj.Nglobal (C var)
ciderpw_data_obj.nk (C var)
ciderpw_data_obj.nspin (C var)
ciderpw_data_obj.plan_g2k (C var)
ciderpw_data_obj.plan_k2g (C var)
ciderpw_data_obj.work_array_size (C var)
ciderpw_data_obj.work_ska (C var)
ciderpw_data_obj.wt_G (C var)
ciderpw_eval_feature_vj (C function)
ciderpw_fill_atom_info (C function)
ciderpw_finalize (C function)
ciderpw_get_bound_inds (C function)
ciderpw_get_local_size_and_lda (C function)
ciderpw_get_real_size (C function)
ciderpw_get_recip_size (C function)
ciderpw_get_struct_size (C function)
ciderpw_get_work_pointer (C function)
ciderpw_get_work_size (C function)
ciderpw_has_mpi (C function)
ciderpw_kernel (C struct)
ciderpw_kernel.expnts_ab (C var)
ciderpw_kernel.expnts_ba (C var)
ciderpw_kernel.kernel_type (C var)
ciderpw_kernel.nalpha (C var)
ciderpw_kernel.nbeta (C var)
ciderpw_kernel.norms_ab (C var)
ciderpw_kernel.norms_ba (C var)
ciderpw_kernel.num_l1_feats (C var)
ciderpw_kernel.work_size (C var)
ciderpw_multiply_l1 (C function)
ciderpw_new_anyspin (C function)
ciderpw_nullify (C function)
CIDERPW_PI (C macro)
CIDERPW_R2C (C macro)
ciderpw_set_atom_info (C function)
ciderpw_set_unit_cell (C function)
ciderpw_set_work (C function)
ciderpw_setup_kernel (C function)
ciderpw_unit_cell (C struct)
ciderpw_unit_cell.dV (C var)
ciderpw_unit_cell.Nglobal (C var)
ciderpw_unit_cell.Nlocal (C var)
ciderpw_unit_cell.offset (C var)
ciderpw_unit_cell.vec (C var)
ciderpw_zero_work (C function)
cls (in module ciderpress.dft.transform_data)
ConstantNormalizer (class in ciderpress.dft.feat_normalizer)
D
DensityNoise (class in ciderpress.models.kernels)
DensityNormalizer (class in ciderpress.dft.feat_normalizer)
DFTKernel (class in ciderpress.models.dft_kernel)
DFTKernel2 (class in ciderpress.models.dft_kernel)
diag() (ciderpress.models.kernels.ADKernel method)
(ciderpress.models.kernels.DensityNoise method)
(ciderpress.models.kernels.DiffAdditiveMixin method)
(ciderpress.models.kernels.DiffARBF method)
(ciderpress.models.kernels.DiffLinearKernel method)
(ciderpress.models.kernels.DiffPolyKernel method)
(ciderpress.models.kernels.DiffTransform method)
(ciderpress.models.kernels.ExponentialDensityNoise method)
(ciderpress.models.kernels.FittedDensityNoise method)
(ciderpress.models.kernels.QARBF method)
DiffAdditiveMixin (class in ciderpress.models.kernels)
DiffAddLLRBF (class in ciderpress.models.kernels)
DiffAddRQ (class in ciderpress.models.kernels)
DiffAntisymRBF (class in ciderpress.models.kernels)
DiffARBF (class in ciderpress.models.kernels)
DiffARBFV2 (class in ciderpress.models.kernels)
DiffConstantKernel (class in ciderpress.models.kernels)
DiffExponentiation (class in ciderpress.models.kernels)
DiffLinearKernel (class in ciderpress.models.kernels)
DiffPolyKernel (class in ciderpress.models.kernels)
DiffProduct (class in ciderpress.models.kernels)
DiffRBF (class in ciderpress.models.kernels)
DiffSum (class in ciderpress.models.kernels)
DiffTransform (class in ciderpress.models.kernels)
DiffWhiteKernel (class in ciderpress.models.kernels)
dump() (ciderpress.pyscf.analyzers.ElectronAnalyzer method)
E
ElectronAnalyzer (class in ciderpress.pyscf.analyzers)
EMap (class in ciderpress.dft.transform_data)
EmptySettings (class in ciderpress.dft.settings)
eval_feat_exp() (ciderpress.dft.plans.NLDFAuxiliaryPlan method)
eval_rho_full() (ciderpress.dft.plans.NLDFAuxiliaryPlan method)
eval_vxc_full() (ciderpress.dft.plans.NLDFAuxiliaryPlan method)
ExponentialDensityNoise (class in ciderpress.models.kernels)
F
feat_spec_list (ciderpress.dft.settings.NLDFSettings property)
(ciderpress.dft.settings.NLDFSettingsVI property)
(ciderpress.dft.settings.NLDFSettingsVIJ property)
(ciderpress.dft.settings.NLDFSettingsVJ property)
(ciderpress.dft.settings.NLDFSettingsVK property)
FeatNormalizer (class in ciderpress.dft.feat_normalizer)
FeatureNormalizer (class in ciderpress.dft.transform_data)
FeatureSettings (class in ciderpress.dft.settings)
fill_bwd() (ciderpress.dft.feat_normalizer.ConstantNormalizer method)
(ciderpress.dft.feat_normalizer.DensityNormalizer method)
(ciderpress.dft.feat_normalizer.FeatNormalizer method)
(ciderpress.dft.feat_normalizer.GeneralNormalizer method)
(ciderpress.dft.feat_normalizer.InhomogeneityNormalizer method)
fill_fwd() (ciderpress.dft.feat_normalizer.ConstantNormalizer method)
(ciderpress.dft.feat_normalizer.DensityNormalizer method)
(ciderpress.dft.feat_normalizer.FeatNormalizer method)
(ciderpress.dft.feat_normalizer.GeneralNormalizer method)
(ciderpress.dft.feat_normalizer.InhomogeneityNormalizer method)
FittedDensityNoise (class in ciderpress.models.kernels)
FracLaplPlan (class in ciderpress.dft.plans)
FracLaplSettings (class in ciderpress.dft.settings)
from_calc() (ciderpress.pyscf.analyzers.ElectronAnalyzer static method)
G
GeneralNormalizer (class in ciderpress.dft.feat_normalizer)
get_a2q_fast() (ciderpress.dft.plans.NLDFSplinePlan method)
get_cider_exponent() (in module ciderpress.dft.settings)
get_cider_exponent_gga() (in module ciderpress.dft.settings)
get_cider_functional() (in module ciderpress.gpaw.calculator)
get_descriptors() (in module ciderpress.pyscf.descriptors)
get_ee_energy_density() (ciderpress.pyscf.analyzers.RHFAnalyzer method)
get_feat_usps (ciderpress.dft.settings.HybridSettings property)
get_feat_usps() (ciderpress.dft.settings.BaseSettings method)
(ciderpress.dft.settings.EmptySettings method)
(ciderpress.dft.settings.FeatureSettings method)
(ciderpress.dft.settings.FracLaplSettings method)
(ciderpress.dft.settings.NLDFSettings method)
(ciderpress.dft.settings.NLDFSettingsVI method)
(ciderpress.dft.settings.NLDFSettingsVIJ method)
(ciderpress.dft.settings.NLDFSettingsVJ method)
(ciderpress.dft.settings.NLDFSettingsVK method)
(ciderpress.dft.settings.SADMSettings method)
(ciderpress.dft.settings.SDMX1Settings method)
(ciderpress.dft.settings.SDMXFullSettings method)
(ciderpress.dft.settings.SDMXG1Settings method)
(ciderpress.dft.settings.SDMXGSettings method)
(ciderpress.dft.settings.SDMXSettings method)
(ciderpress.dft.settings.SemilocalSettings method)
get_features() (ciderpress.dft.plans.SADMPlan method)
get_function_to_convolve() (ciderpress.dft.plans.NLDFAuxiliaryPlan method)
get_k() (ciderpress.models.dft_kernel.DFTKernel method)
get_k_and_deriv() (ciderpress.models.dft_kernel.DFTKernel method)
get_kctrl() (ciderpress.models.dft_kernel.DFTKernel method)
get_params() (ciderpress.models.kernels.ADKernel method)
(ciderpress.models.kernels.DiffTransform method)
(ciderpress.models.kernels.SpinSymKernel method)
get_q2a() (ciderpress.dft.plans.NLDFAuxiliaryPlan method)
get_reasonable_normalizer() (ciderpress.dft.settings.BaseSettings method)
(ciderpress.dft.settings.EmptySettings method)
(ciderpress.dft.settings.FeatureSettings method)
(ciderpress.dft.settings.FracLaplSettings method)
(ciderpress.dft.settings.HybridSettings method)
(ciderpress.dft.settings.NLDFSettings method)
(ciderpress.dft.settings.NLDFSettingsVI method)
(ciderpress.dft.settings.NLDFSettingsVIJ method)
(ciderpress.dft.settings.NLDFSettingsVJ method)
(ciderpress.dft.settings.NLDFSettingsVK method)
(ciderpress.dft.settings.SADMSettings method)
(ciderpress.dft.settings.SDMX1Settings method)
(ciderpress.dft.settings.SDMXFullSettings method)
(ciderpress.dft.settings.SDMXG1Settings method)
(ciderpress.dft.settings.SDMXGSettings method)
(ciderpress.dft.settings.SDMXSettings method)
(ciderpress.dft.settings.SemilocalSettings method)
get_rs() (ciderpress.pyscf.analyzers.RHFAnalyzer method)
get_vec_eval() (in module ciderpress.dft.xc_evaluator)
get_xc() (ciderpress.pyscf.analyzers.RHFAnalyzer method)
get_xc_energy() (ciderpress.pyscf.analyzers.RHFAnalyzer method)
H
HybridPlan (class in ciderpress.dft.plans)
HybridSettings (class in ciderpress.dft.settings)
hyperparameters (ciderpress.models.kernels.ADKernel property)
(ciderpress.models.kernels.DiffTransform property)
I
InhomogeneityNormalizer (class in ciderpress.dft.feat_normalizer)
initialize() (ciderpress.gpaw.calculator.CiderGPAW method)
is_empty (ciderpress.dft.settings.BaseSettings property)
is_stationary() (ciderpress.models.kernels.ADKernel method)
(ciderpress.models.kernels.DiffAddLLRBF method)
(ciderpress.models.kernels.DiffAddRQ method)
(ciderpress.models.kernels.DiffARBFV2 method)
(ciderpress.models.kernels.DiffLinearKernel method)
(ciderpress.models.kernels.DiffPolyKernel method)
(ciderpress.models.kernels.DiffTransform method)
K
k_and_deriv() (ciderpress.models.kernels.DiffAntisymRBF method)
(ciderpress.models.kernels.DiffARBF method)
(ciderpress.models.kernels.DiffRBF method)
(ciderpress.models.kernels.PartialRBF method)
L
LMap (class in ciderpress.dft.transform_data)
load() (ciderpress.pyscf.analyzers.ElectronAnalyzer static method)
M
make_cider_calc() (in module ciderpress.pyscf.dft)
(in module ciderpress.pyscf.pbc.dft)
map() (ciderpress.models.dft_kernel.DFTKernel method)
(ciderpress.models.dft_kernel.DFTKernel2 method)
(ciderpress.models.train.MOLGP method)
(ciderpress.models.train.MOLGP2 method)
MappedDFTKernel (class in ciderpress.dft.xc_evaluator)
MappedDFTKernel2 (class in ciderpress.dft.xc_evaluator2)
mode (ciderpress.models.dft_kernel.DFTKernel attribute)
module
ciderpress.dft.feat_normalizer
ciderpress.dft.plans
ciderpress.dft.settings
ciderpress.dft.transform_data
ciderpress.dft.xc_evaluator
ciderpress.dft.xc_evaluator2
ciderpress.gpaw.calculator
ciderpress.models.dft_kernel
ciderpress.models.kernel_plans.kernel_tools
ciderpress.models.kernels
ciderpress.models.train
ciderpress.pyscf.analyzers
ciderpress.pyscf.descriptors
ciderpress.pyscf.dft
ciderpress.pyscf.pbc.dft
MOLGP (class in ciderpress.models.train)
MOLGP2 (class in ciderpress.models.train)
N
nfeat (ciderpress.dft.settings.BaseSettings property)
(ciderpress.dft.settings.EmptySettings property)
(ciderpress.dft.settings.FeatureSettings property)
(ciderpress.dft.settings.FracLaplSettings property)
(ciderpress.dft.settings.HybridSettings property)
(ciderpress.dft.settings.NLDFSettings property)
(ciderpress.dft.settings.SADMSettings property)
(ciderpress.dft.settings.SDMX1Settings property)
(ciderpress.dft.settings.SDMXFullSettings property)
(ciderpress.dft.settings.SDMXG1Settings property)
(ciderpress.dft.settings.SDMXGSettings property)
(ciderpress.dft.settings.SDMXSettings property)
(ciderpress.dft.settings.SemilocalSettings property)
nldf_type (ciderpress.dft.settings.NLDFSettings property)
NLDFAuxiliaryPlan (class in ciderpress.dft.plans)
NLDFGaussianPlan (class in ciderpress.dft.plans)
NLDFSettings (class in ciderpress.dft.settings)
NLDFSettingsVI (class in ciderpress.dft.settings)
NLDFSettingsVIJ (class in ciderpress.dft.settings)
NLDFSettingsVJ (class in ciderpress.dft.settings)
NLDFSettingsVK (class in ciderpress.dft.settings)
NLDFSplinePlan (class in ciderpress.dft.plans)
num_feat_param_sets (ciderpress.dft.settings.NLDFSettings property)
(ciderpress.dft.settings.NLDFSettingsVI property)
(ciderpress.dft.settings.NLDFSettingsVIJ property)
(ciderpress.dft.settings.NLDFSettingsVJ property)
(ciderpress.dft.settings.NLDFSettingsVK property)
num_vi_feats (ciderpress.dft.settings.NLDFSettings property)
(ciderpress.dft.settings.NLDFSettingsVI property)
(ciderpress.dft.settings.NLDFSettingsVIJ property)
(ciderpress.dft.settings.NLDFSettingsVJ property)
(ciderpress.dft.settings.NLDFSettingsVK property)
num_vj (ciderpress.dft.plans.NLDFAuxiliaryPlan property)
O
OmegaMap (class in ciderpress.dft.transform_data)
P
PartialARBF (class in ciderpress.models.kernels)
PartialRBF (class in ciderpress.models.kernels)
Q
QARBF (class in ciderpress.models.kernels)
R
requires_vector_input (ciderpress.models.kernels.ADKernel property)
(ciderpress.models.kernels.DiffTransform property)
RHFAnalyzer (class in ciderpress.pyscf.analyzers)
RKSAnalyzer (in module ciderpress.pyscf.analyzers)
S
SADMPlan (class in ciderpress.dft.plans)
SADMSettings (class in ciderpress.dft.settings)
SDMX1Settings (class in ciderpress.dft.settings)
SDMXBaseSettings (class in ciderpress.dft.settings)
SDMXFullSettings (class in ciderpress.dft.settings)
SDMXG1Settings (class in ciderpress.dft.settings)
SDMXGSettings (class in ciderpress.dft.settings)
SDMXSettings (class in ciderpress.dft.settings)
SemilocalSettings (class in ciderpress.dft.settings)
set_control_points() (ciderpress.models.train.MOLGP method)
SignedUMap (class in ciderpress.dft.transform_data)
SingleDot (class in ciderpress.models.kernels)
SingleRBF (class in ciderpress.models.kernels)
SLBMap (class in ciderpress.dft.transform_data)
SLDMap (class in ciderpress.dft.transform_data)
SLNMap (class in ciderpress.dft.transform_data)
SLTMap (class in ciderpress.dft.transform_data)
SLTWMap (class in ciderpress.dft.transform_data)
SLXMap (class in ciderpress.dft.transform_data)
SPEC_USPS (in module ciderpress.dft.settings)
SpinSymARBF (class in ciderpress.models.kernels)
SpinSymKernel (class in ciderpress.models.kernels)
SpinSymPoly (class in ciderpress.models.kernels)
SpinSymRBF (class in ciderpress.models.kernels)
store_mol_covs() (ciderpress.models.train.MOLGP method)
SubsetAddLLRBF (class in ciderpress.models.kernels)
SubsetAddRQ (class in ciderpress.models.kernels)
SubsetARBF (class in ciderpress.models.kernels)
SubsetPoly (class in ciderpress.models.kernels)
SubsetRBF (class in ciderpress.models.kernels)
T
theta (ciderpress.models.kernels.ADKernel property)
(ciderpress.models.kernels.DiffTransform property)
TMap (class in ciderpress.dft.transform_data)
U
ueg_vector (ciderpress.dft.settings.HybridSettings property)
ueg_vector() (ciderpress.dft.settings.BaseSettings method)
(ciderpress.dft.settings.EmptySettings method)
(ciderpress.dft.settings.FeatureSettings method)
(ciderpress.dft.settings.FracLaplSettings method)
(ciderpress.dft.settings.NLDFSettingsVI method)
(ciderpress.dft.settings.NLDFSettingsVIJ method)
(ciderpress.dft.settings.NLDFSettingsVJ method)
(ciderpress.dft.settings.NLDFSettingsVK method)
(ciderpress.dft.settings.SADMSettings method)
(ciderpress.dft.settings.SDMX1Settings method)
(ciderpress.dft.settings.SDMXFullSettings method)
(ciderpress.dft.settings.SDMXG1Settings method)
(ciderpress.dft.settings.SDMXGSettings method)
(ciderpress.dft.settings.SDMXSettings method)
(ciderpress.dft.settings.SemilocalSettings method)
UHFAnalyzer (class in ciderpress.pyscf.analyzers)
UKSAnalyzer (in module ciderpress.pyscf.analyzers)
UMap (class in ciderpress.dft.transform_data)
V
V2Map (class in ciderpress.dft.transform_data)
V3Map (class in ciderpress.dft.transform_data)
V4Map (class in ciderpress.dft.transform_data)
VMap (class in ciderpress.dft.transform_data)
VZMap (class in ciderpress.dft.transform_data)
W
WMap (class in ciderpress.dft.transform_data)
X
X1ctrl (ciderpress.models.dft_kernel.DFTKernel attribute)
XMap (class in ciderpress.dft.transform_data)
Y
YMap (class in ciderpress.dft.transform_data)
Z
ZMap (class in ciderpress.dft.transform_data)